Uploading Templates
From Foldeomics Wiki
To make deposition easier, PFD supports the importing of data from PFD templates.
The templates are provided as Microsoft Excel format spreadsheets, which when being uploaded must be saved in Comma Seperated Value (CSV) format.
PFD currently supports the uploading of the following templates:
Mutant Data Template
Chevron & Equilbrium Curve Data Template
Obtaining & Using PFD's Excel Templates
Note: For PFD to import your data correctly you must use the latest templates, as provided by PFD.
Do not attempt to recreate the templates & upload. Doing so may result in your data not uploading correctly, or not at all. PFD uses validation to check that the templates being upload are its own.
You can download the mutant data template by clicking here & the chevron / equilibrium curve data template by clicking here.
The templates have been provided in Microsoft Excel format, as they contain useful formulas to help calculate some of the data for you. These template should be able to be opened with Microsoft Excel 97 & later.
If you do not have Microsoft Excel installed, you can download a free copy of OpenOffice from www.openoffice.org, or the mac OS X native NeoOffice from www.neooffice.org, both of which can also be used to open the template. Once you have entered the data into the template, be sure to save it, and keep a backup copy.
Description of the Templates
Like what fields are for what data and what to do if you don't have all the data.
- mutation type
- pdb id
- location
- sec structure
- contacts
- local Interactions
- asa
- buried asa
- experiment temperature
- D (min)
- D [50%]
- D [50%] error
- mD-N
- mD-N error
- mD-N avg
- mD-N avg error
- DGD-N(m)
- DGD-N(m) error
- DGD-N<m>
- DGD-N<m> error
- DDGD-NH2O(m)
- DDGD-NH2O(m) error
- DDGD-N H2O <m>
- DDGD-N H2O <m> error
- Unfolding fit
- D (min) unfolding
- D (max) unfolding
- kuH2O
- kuH2O error
- lnkuH2O
- lnkuH2O error
- mu
- mu error
- m‡-N
- m‡-N error
- DDG‡-N(OM)
- DDG‡-N(OM) error
- Folding fit
- D (min) refolding
- D (max) refolding
- kfH2O
- kfH2O error
- lnkfH2O
- lnkfH2O error
- mf
- mf error
- m‡-D
- m‡-D error
- DDG‡-D
- DDG‡-D error
- DDG‡-D
- DDG‡-D error
- KD-N
- KD-N error
- [denat] 50% kinetic
- [denat] 50% kinetic error
- mD-N kinetic
- mD-N kinetic error
- DGD-NH2O kinetic
- DGD-NH2O kinetic error
- bT kinetic
- bT kinetic error
- bT kinetic
- bT kinetic error
- bT equilibrium
- bT equilibrium error
- bT equilibrium
- bT equilibrium error
- phi F
- phi F error
- phi F
- phi F error
- Notes for Moderator
- Public Notes
