Moving your mouse over a data point will display that protein's name. Clicking on a data point will display folding data on that protein. To view more data on a SCOP Class click on it's name in the legend.
BLAST - Blast your sequence against PFD database, PFD entries against PFD or against NCBI Non Redundant DB.
Compare View - Compare and highlight the similarities and differences between your search results.
Eg. FRB
Export Select Search Results Data - Simply select which data you want to include & click "export selected data to CSV". (also works with compare view)
Save time, base depositions on Search Results! - Select the data you want & click the button. (you need to be logged in for this to work)
"+mutants" Search Keyword - You can now use the search box (in the sidebar) to quickly find a protein & its mutants. Simply add "+mutants" (without the quotes) after the protein name.
Eg. CI2+mutants
Mutant Data Template Upgrade - You can now upload up to 150 mutants in one deposition using the new mutant templates.
Depositions for busy people - Don't have time to use our new "base deposition on search result" feature, just paste your data in the textbox & we'll do the deposition for you.
Wiki for the community - We've opened up our wiki, create an account and share your knowledge.
This is the release of version 2.0 of the Protein Folding Database.
We have reworked the entire site with the aim of creating the definative resource for protein folding.
So far we have populated the database with data from the paper "Maxwell et al (2005) Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins". Protein Sci. (view PubMed), with the addition of a set of mutants to test the phi-value import.
Now that the database and website does most of the basic things we want we are expanding the dataset.
Much of the development time was spent on deposition tools, so we encourage you to use these to deposit your own data - we think that a comprehensive collection of folding data will benefit everyone in the field.
We are particularly interested in representing data graphically, and have started this with the contact order plot as well as plotting raw data such as chevron and equilibrium curves.
